PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013607622.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family LBD
Protein Properties Length: 127aa    MW: 14566.9 Da    PI: 7.7897
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013607622.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26081.31.5e-25131122101
          DUF260   2 CaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelal 96 
                     C++C   ++ C+++C +a yfp+e +++++++ klFG++n+++++k +++e+ + ++ss++ e+ a+++d ++G +gvi+kl ++++ ++a l++
  XP_013607622.1  13 CCVCIEENKICTRKCEFAAYFPNEVQSDYEAATKLFGTTNIISMMKLASHEQNHLLASSILKEGAAWTDDNIRGGYGVIQKLMWEIKLHEAYLSE 107
                     **********************************************************************************************9 PP

          DUF260  97 lkeel 101
                     +k+++
  XP_013607622.1 108 RKKKI 112
                     99875 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089118.16411112IPR004883Lateral organ boundaries, LOB
PfamPF031957.8E-2113108IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 127 aa     Download sequence    Send to blast
MEALRTDSKR GCCCVCIEEN KICTRKCEFA AYFPNEVQSD YEAATKLFGT TNIISMMKLA  60
SHEQNHLLAS SILKEGAAWT DDNIRGGYGV IQKLMWEIKL HEAYLSERKK KISEEKKQIV  120
LLLNQYI
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013607622.14e-91PREDICTED: LOB domain-containing protein 5-like
RefseqXP_013668601.12e-90PREDICTED: uncharacterized protein LOC106372884
SwissprotQ9C8V81e-39LBD5_ARATH; LOB domain-containing protein 5
TrEMBLA0A078JEG22e-90A0A078JEG2_BRANA; BnaUnng01320D protein
STRINGAT1G36000.13e-37(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM122821432
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G36000.18e-41LOB domain-containing protein 5